Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs11124101 chr2:106897262 C/T 2.45E-6 115 41.77 46.43 15.98 KM Plot
THYM rs11127277 chr2:30798075 C/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs11127279 chr2:30805082 C/A 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs111288376 chr5:149869528 T/A 1.5E-8 118 41.22 35.13 12.63 KM Plot
THYM rs111315023 chr6:3266965 G/GCGCACA 0 116 4.13 44.3 38.83 KM Plot
THYM rs111334122 chr5:34853409 G/C 0.000129 116 41.22 42.9 28.43 KM Plot
THYM rs111335107 chr3:192209 G/T 7.81E-13 118 44.38 27.1 6 KM Plot
THYM rs111393137 chr4:115537723 C/T 0 119 38.23 52.95 4.13 KM Plot
THYM rs111396854 chr11:125580947 C/T 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs111555040 chr21:44068259 T/G 0.000139 115 40.67 42.9 28.43 KM Plot
THYM rs111558933 chr19:29298077 A/G 6.64E-6 115 48 33.67 22.9 KM Plot
THYM rs1115600 chr20:37202173 T/G 0.00019 116 22.9 25.83 46.43 KM Plot
THYM rs111567898 chr11:11810696 A/C 0.000196 117 39.5 42.9 13.35 KM Plot
THYM rs11159425 chr14:80405359 T/G 1.14E-6 119 9.85 38.58 42.9 KM Plot
THYM rs11159426 chr14:80405645 G/A 1.14E-6 119 9.85 38.58 42.9 KM Plot